Why Do Pepper Plant Stems Turn Black?

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Bell peppers are tropical plants and do best in warm weather.

Why do pepper plant stems turn black? It's a common question among gardeners since the plants are so common. Peppers (​Capsicum​ spp.) are the second most popular vegetables, after tomatoes, that people grow in their vegetable gardens. Peppers are easy to raise and they produce a lot of fruit. They're also not bothered by many insect pests. However, they are susceptible to some diseases that can cause their stems to turn black.


Pepper plants can have a black stem due to a variety of diseases, including phytophthora, sclerotinia, southern blight and fusarium.

Phytophthora in Pepper Plants

The most common symptom of phytophthora blight is stem rot. Wet, swollen, dark brown or black tissue appears on the stem and may encircle it. If it does, the plant wilts suddenly, without turning yellow, because no water or nutrients are able to move up past the girdling.

Sometimes a fungal growth can be seen, especially if the weather is wet. Symptoms are less common on the leaves, but include the appearance of dark green water-soaked lesions that turn light brown when they dry out. Cankers may also form on the branches. Abnormal tissue may appear on the fruit, along with a fungal growth and roots can rot.

Phytophthora Control Measures

Plant peppers in well-drained soil, and on raised beds, to help prevent phytophthora. Some varieties of pepper like Emerald Isle, Paladin and Rainger are resistant to this disease. Don't plant peppers in soil where tomatoes, peppers, eggplant or gourds have been planted the previous three years. Avoid overwatering, or watering plants from overhead, in order to keep the leaves as dry as possible. Mulch with straw to keep soil away from fruit. Remove diseased plants as soon as symptoms appear, and burn them.

Sclerotinia or Southern Blight

Sclerotinia stem rot and southern blight are fungal diseases that cause similar symptoms, including black or dark brown lesions that form on the stem near the soil line. The lesions can completely encircle the stem, causing the plant to wilt and die. White fungal threads grow up the stem surface and leaf petioles may also be infected. In addition, fruit may rot.

Sclerotinia or Southern Blight Control

Sclerotinia stem rot and Southern blight are difficult to control with chemicals or fumigation. The best way to control these fungal diseases is by rotating crops. Don't plant peppers where cabbage, celery, lettuce, potatoes or tomatoes have grown. In addition, you should avoid injuring plant stems since the fungi can enter through wounds. Using black plastic mulch will also help by keeping plants out of contact with the soil. Flooding your garden with several inches of water for six weeks will kill the resting bodies of the fungi that cause these diseases.

Fusarium in Pepper Plants

Symptoms of fusarium include soft black cankers on the stem. As the disease progresses, the cankers may completely encircle the stem. Small, light orange structures, which are fungal fruiting bodies, form on the cankers, and pinkish-white fungal threads may also appear. Fruit turns black and mushy and leaves can look mottled.

Fusarium Control Measures

Prune and remove diseased plant parts with pruning shears to keep the disease from spreading to healthy plants. Bag them in plastic and discard them, along with one or two plants on each side of the infected one. Disinfect pruning tools each time they touch a diseased plant. Wear disposable gloves when working with infected plants and discard them when you're finished. Clean soil off shoes when walking in infected areas, and disinfect the bottoms of your shoes. Avoid watering plants from overhead, and ensure plants are properly ventilated by not crowding them.


Lani Thompson

Lani Thompson began writing in 1987 as a journalist for the "Pequawket Valley News." In 1993 she became managing editor of the "Independent Observer" in East Stoneham, Maine. Thompson also developed and produced the "Clan Thompson Celiac Pocketguides" for people with celiac disease. She attended the University of New Hampshire.